Valparaiso University is also host to several national organizations and programs, with head offices and leadership based on campus.

• New American Colleges & Universities
  
• Initiative for Schools, Industries and the Sciences (ISIS)
• Institute of Liturgical Studies
• Lilly Fellows Program in Humanities and the Arts
• Lutheran Basketball Association of America
• Practicing Our Faith
• Project on Civic Reflection
• Project on Theological Exploration of Vocation